InhaltsangabeIntroduction

Section 1. Nonspecific DNA binding: searching DNA and altering DNA properties



1. Mirny DNA search theory

2. Yan Mei Wang-DNA search, hopping vs. sliding

3. WilliamsSSB DNA search

4. WuiteHNS proteins or DNA sliding search

5. Barskyprocessivity clamp

6. MaherDNA bending proteins

7. Ansari kinetics of DNA binding and bending by proteins

8. Record modes of DNA interaction by architectural proteins



Section 2. Complex protein-DNA interactions



1. Finzi DNA looping by repressor proteins

2. Ghosh
NFkappaB transcription factor crystallography

2. van Oijen - Replication complex

3. Morrical
DNA recombination complexes

4. Fried DNA binding by alkyltransferase repair proteins

5. Beese or Darst- DNA polymerase crystallography

6. Beuning
Polymerase switching in response to DNA damage

7. Leuba
single molecule studies on chromatin

8. Higgs Regulation of chromosome conformation in cells

9. Widom nucleosome positioning across genomes